List of publications

By Google Scholar

Regular papers on international journals (all refereed)

1. H. Kori, I.Z. Kiss, S. Jain, J.L. Hudson:
   "Partial synchronization of relaxation oscillators with repulsive coupling in autocatalytic integrate-and-fire model and electrochemical experiments",
   Chaos 28, 045111 (2018) [7 pages]
   DOI: 10.1063/1.5022497
   
2. Kaori Sugimura, H. Kori:
   "A reduced cell-based phase model for tissue polarity alignment through global anisotropic cues",
   Scientific Reports 7, 17466 (2017) [13 pages]
   DOI: 10.1038/s41598-017-17611-8
   
3. A. Isomura, H. Kori, R. Kageyama:
   "Segmentation Genes Enter an Excited State",
   Developmental cell 43(2), pp.121-123 (2017) [3 pages]
   DOI: 10.1016/j.devcel.2017.10.008
   
4. S. Koinuma, H. Kori, I.T. Tokuda, K. Yagita, Y. Shigeyoshi:
   "Transition of phase response properties and singularity in the circadian limit cycle of cultured cells",
   PLOS one 12(7), e0181223 (2017) [16pages]
   DOI: 10.1371/journal.pone.0181223
   
5. Y. Murayama, H. Kori, C. Oshima, T. Kondo, H. Iwasaki, H. Ito:
   "Low temperature nullifies the circadian clock in cyanobacteria through Hopf bifurcation",
   PNAS 114, pp. 5641-5646 (2017) [6 pages]
   DOI: 10.1073/pnas.1620378114
   プレスリリース
6. H. Kori, Y. Yamaguchi, H. Okamura:
   "Accelerating recovery from jet lag: prediction from a multi-oscillator model and its experimental confirmation in model animals",
   Scientific Reports 7, 46702 (2017) [10 pages]
   DOI: 10.1038/srep46702
   プレスリリース
7. A. Isomura, F. Ogushi, H. Kori, R. Kageyama:
   "Optogenetic perturbation and bioluminescence imaging to analyze cell-to-cell transfer of oscillatory information",
   Genes & Development 31, pp. 524-535 (2017)
   DOI: 10.1101/gad.294546.116
   
8. M. Iima, H. Kori, T. Nakagaki:
   "Studies of the phase gradient at the boundary of the phase diffusion equation, motivated by peculiar wave patterns of rhythmic contraction in the amoeboid movement of Physarum polycephalum",
   Physics D 50, 154004 (2017) [10 pages]
   DOI: 10.1088/1361-6463/aa6269
   
9. Y. Izumida, H. Kori, U. Seifert:
   "Energetics of synchronization in coupled oscillators rotating on circular trajectories",
   Phys. Rev. E 94, 052221 (2016) [10 pages]
   DOI: 10.1103/PhysRevE.94.052221
   
10. Y. Kobayashi, H. Kori:
    "Synchronization failure caused by interplay between noise and network heterogeneity",
    Chaos 26, 094805 (2016)[8 pages]
    DOI: 10.1063/1.4954216
    
11. H. Shimojo, A. Isomura, Toshiyuki Ohtsuka, H. Kori, Hitoshi Miyachi, Ryoichiro Kageyama:
    "Oscillatory control of Delta-like1 in cell interactions regulates dynamic gene expression and tissue morphogenesis",
    Genes & Development 30, pp. 102-116 (2016)
    DOI: 10.1101/gad.270785.115
    
12. K. Sugimura, H. Kori:
    "Exponential system-size dependence of the lifetime of transient spiral chaos in excitable and oscillatory media",
    Phys. Rev. E 92, 062915 (2015) [6 pages]
    DOI: 10.1103/PhysRevE.92.062915
    
13. T. Nagy, E. Verner, V. Gspr, H. Kori, I.Z. Kiss:
    "Delayed feedback induced multirhythmicity in the oscillatory electrodissolution of copper",
    Chaos 25, 064608 (2015) [8 pages]
    DOI: 10.1063/1.4921694
    
14. Y. Kobayashi, H. Kori:
    "Reentrant transition in coupled noisy oscillators",
    Phys. Rev. E 91, 012901 (2015) [6 pages]
    DOI: 10.1103/PhysRevE.91.012901
    
15. H. Kori, Y. Kuramoto, S. Jain, I.Z. Kiss, J.L. Hudson:
    "Clustering in Globally Coupled Oscillators Near a Hopf Bifurcation: Theory and Experiments",
    Phys. Rev. E 89, 062906 (2014) [11 pages]
    DOI: 10.1103/PhysRevE.89.062906
    
16. I. Imayoshi, A. Isomura, Y. Harima, K. Kawaguchi, H. Kori, H. Miyachi, T. Fujiwara, F. Ishidate, R. Kageyama:
    "Oscillatory Control of Factors Determining Multipotency and Fate in Mouse Neural Progenitors",
    Science 342, pp. 1203-1208 (2013)
    DOI: 10.1126/science.1242366
    
17. Y. Yamaguchi, T. Suzuki, Y. Mizoro, H. Kori, K. Okada, Y. Chen, J.M. Fustin, F. Yamazaki, N. Mizuguchi, J. Zhang, X. Dong, G. Tsujimoto, Y. Okuno, M. Doi, H. Okamura:
    "Mice Genetically Deficient in Vasopressin V1a and V1b Receptors Are Resistant to Jet Lag",
    Science 342, pp. 85-90 (2013)
    DOI: 10.1126/science.1238599
    
18. F. Mori, H. Kori:
    "Period variability of coupled noisy oscillators",
    Phys. Rev. E 87, 030901 (2012) [5 pages]
    DOI: 10.1103/PhysRevE.87.030901
    
19. N.E. Kouvaris, H. Kori, A.S. Mikhailov:
    "Traveling and Pinned Fronts in Bistable Reaction-Diffusion Systems on Networks",
    Plos One 7(9), e45029 (2012) [12 pages]
    DOI: 10.1371/journal.pone.0045029
    
20. H. Kori, Y. Kawamura, N. Masuda:
    "Structure of Cell Networks Critically Determines Oscillation Regularity",
    J. Theoretical Biology 297, pp. 61 - 72, (2012)
    DOI: 10.1016/j.jtbi.2011.12.007
    
21. R. Toenjes, H. Kori:
    "Synchronization of weakly perturbed Markov chain oscillators",
    Phys. Rev. E 84, 056206 (2011, November) [14 pages]
    DOI: 10.1103/PhysRevE.84.056206
    
22. M. Doi, A. Ishida, A. Miyake, M. Sato, R. Komatsu, F. Yamazaki, I. Kimura, S. Tsuchiya, H. Kori, K. Seo, Y. Yamaguchi, M. Matsuo, J.M. Fustin, R. Tanaka, Y. Santo, H. Yamada, Y. Takahashi, M. Araki, K. Nakao, S. Aizawa, M. Kobayashi, K. Obrietan, G.Tsujimoto, H. Okamura:
    "Circadian regulation of intracellular G-protein signalling mediates intercellular synchrony and rhythmicity in the suprachiasmatic nucleus",
    Nature Communications 2, 327 (2011) [9 pages]
    DOI: 10.1038/ncomms1316
    
23. *Y. Kawamura, H. Nakao, K. Arai, H. Kori, and Y. Kuramoto:
    "Phase synchronization between collective rhythms of globally coupled oscillator groups: Noisy identical case",
    Chaos 20, 043109 (2010) [10 pages]
    DOI: 10.1063/1.3491344
    
24. *Y. Kawamura, H. Nakao, K. Arai, H. Kori, and Y. Kuramoto:
    "Phase synchronization between collective rhythms of globally coupled oscillator groups: Noiseless nonidentical case",
    Chaos 20, 043110 (2010) [8 pages]
    DOI: 10.1063/1.3491346
    
25. *N. Masuda, H. Kori:
    "Dynamics-based centrality for directed networks",
    Phys. Rev. E 82, 056107 (2010, November) [11 pages]
    DOI: 10.1103/PhysRevE.82.056107
    
26. N. Masuda, Y. Kawamura, *H. Kori:
    "Collective fluctuations in networks of noisy components",
    New J. Phys. 12, (2010) [15 pages]
    DOI: 10.1088/1367-2630/12/9/093007
    
27. *R. Tonjes, N. Masuda, H. Kori:
    "Synchronization transition of identical phase oscillators in a directed small-world network",
    Chaos 20, 033108 (2010) [12 pages]
    DOI: 10.1063/1.3476316
    
28. *K.H. Nagai, H. Kori:
    "Noise-induced synchronization of a large population of globally coupled nonidentical oscillators",
    Phys. Rev. E 81, 065202(R) (2010) [4 pages]
    DOI: 10.1103/PhysRevE.81.065202
    
29. Y. Zhai, I. Z. Kiss, H. Kori, *J. L. Hudson:
    "Desynchronization and clustering with pulse stimulations of coupled electrochemical relaxation oscillators",
    Physica D 239, pp. 848-856 (2010)
    DOI: 10.1016/j.physd.2009.06.004
    
30. Craig G. Rusin, Hiroshi Kori, István Z. Kiss, John L. Hudson:
    "Synchronization engineering: tuning the phase relationship between dissimilar oscillators using nonlinear feedback",
    Philosophical Transactions A, 368 (2010, April)
    DOI: 10.1098/rsta.2010.0032
    
31. *N. Masuda, Y. Kawamura and H. Kori:
    "Impact of hierarchical modular structure on ranking of individual nodes in directed networks",
    New J. Phys. 11, 113002 (2009) [21 pages]
    DOI: 10.1088/1367-2630/11/11/113002
    
32. N. Masuda, Y. Kawamura, H. Kori:
    "Analysis of relative influence of nodes in directed networks",
    Phys. Rev. E 80, 046114 (2009) [10 pages]
    DOI: 10.1103/PhysRevE.80.046114
    
33. H. Kori, Y. Kawamura, H. Nakao, K. Arai, Y. Kuramoto:
    "Collective-phase description of coupled oscillators with general network structure",
    Phys. Rev. E 80, 036207 (2009) [9 pages]
    DOI: 10.1103/PhysRevE.80.036207
    
34. Y. K. Takahashi, H. Kori, and N. Masuda,
    "Self-organization of feed-forward structure and entrainment in excitatory neural networks with spike-timing-dependent plasticity",
    Phys. Rev. E 79, 051904 (2009) [10 pages]
    DOI: 10.1103/PhysRevE.79.051904
    

35. C. G. Rusin, I. Z. Kiss, H. Kori, *J. L. Hudson:
    "A Framework for Engineering the Collective Behavior of Complex Rhythmic Systems",
    Industrial & engineering chemistry research 48, 9416 (2009) [16pages]
    DOI: 10.1021/ie801807f
    
36. Y. Kobayashi, H. Kori,
    "Design principle of multi-cluster and desynchronized states in oscillatory media via nonlinear global feedback",
    New J. Phys. 11, 033018 (2009) [17 pages]
    DOI: 10.1088/1367-2630/11/3/033018
    

37. *T. Harada, T. Yokogawa, T. Miyaguchi, H. Kori,
    "Singular behavior of slow dynamics of single excitable cells",
    Biophysical Journal 96, 255-267 (2009, January)
    DOI: 10.1529/biophysj.108.139691
    

38. Y. Kawamura, *H. Nakao, K. Arai, H. Kori, and Y. Kuramoto:
    "Collective Phase Sensitivity",
    Phys. Rev. Lett. 101, 024101 (2008) [4 pages]
    DOI: 10.1103/PhysRevLett.101.024101
    

39. H. Kori, C. G. Rusin, I. Z. Kiss, and J. L. Hudson:
    "Synchronization Engineering: Theoretical Framework and Application to Dynamical Clustering",
    in the forcus issue on "Design and Control of Self-Organization in Distributed Active Systems"
    Chaos 18, 026111 (2008) [13 pages]
    DOI: 10.1063/1.2927531
    

40. *I. Z. Kiss, M. Quigg, S. C. Chun, H. Kori, and J. L. Hudson:
    "Characterization of Synchronization in Interacting Groups of Oscillators: Application to Seizures",
    Biophysical Journal 94, pp.1121-1130 (2008)
    DOI: 10.1529/biophysj.107.113001
    

41. I. Z. Kiss, C. G. Rusin, H. Kori, *J. L. Hudson,
    "Engineering Complex Dynamical Structures: Sequential Patterns and Desynchronization",
    Science 316, 1886-1889 (2007) [5pages]
    DOI: 10.1126/science.1140858
    

    This study is introduced in "Perspectives" of Science: Science 316, 1857 (2007)

42. N. Masuda and H. Kori,
    "Formation of feedforward networks and frequency synchrony by spike-timing-dependent plasticity",
    Journal of Computational Neuroscience 22, pp. 327-345 (2007)
    DOI: 10.1007/s10827-007-0022-1
    
43. H. Kori, A. S. Mikhailov:
    "Strong effects of network architecture in the entrainment of coupled oscillator systems"
    Phys. Rev. E 74 066115 (2006) [14 pages]
    DOI: 10.1103/PhysRevE.74.066115
    
44. S. Lammer, H. Kori, K. Peters and D. Helbing:
    "Decentralised control of material or traffic flows in networks using phase-synchronisation"
    Physica A 363, pp. 39-47 (2006)
    DOI: 10.1016/j.physa.2006.01.047
    
45. H. Kori, A. S. Mikhailov:
    "Entrainment of randomly coupled oscillator networks by a pacemaker"
    Phys. Rev. Lett. 93, 254101 (2004) [4pages]
    DOI: 10.1103/PhysRevLett.93.254101
    
46. H. Kori,
    "Slow switching in a population of delayed pulse-coupled oscillators"
    Phys. Rev. E 68, 021919 (2003) [8pages]
    DOI: 10.1103/PhysRevE.68.021919
    
47. H. Kori
    "Slow switching in globally coupled oscillators:
    robustness and occurrence through delayed coupling"
    Phys. Rev. E 63, 046214 (2001) [10pages]
    DOI: 10.1103/PhysRevE.63.046214
    

Books

• 郡宏、森田善久：
  「生物リズムと力学系」
  共立出版　(2011) [171 pages]. （原稿をごらんになりたい場合は郡までメールをください）
  Hiroshi Kori and Yoshihisa Morita:
  "Dynamical system approach to biological rhythms"
  Kyoritsu-Syuppan (2011) [171 pages].

review articles

• Hiroshi Kori:
  ”Another Role of Neural Communication: Suppression of Undesirable Oscillations"
  JPSJ News Comments 16, 09 (2019)

• 郡宏
  「数理モデルによるジェットラグ症状の理解」
  医学のあゆみ 267 (6), pp. 463-468 (2018)
  
  Hirohi Kori:
  Understanding of jet-lag symptons using mathematical models
  Journal of Clinical and Experimental Medicine (IGAKU NO AYUMI) 267 (6), pp. 463-468 (2018)
  

• 郡宏
  「リズムのゆらぎと応答のミクロ・マクロリンク」
  数理科学 55 (7), pp. 1248-1255 (2017)
  

• 郡宏
  「現代物理のキーワード：同期現象研究の広がり」
  日本物理学会誌 69, 602-603 (2014)
  

• 郡宏
  「コラム：メイドインジャパン物理用語　物性編 　蔵本-シバシンスキー方程式」
  パリティ Vol. 28 No. 10 (2013) （最終稿）

• 伊藤浩史、郡宏
  「生物リズムの生まれ方：数学的視点から」
  細胞工学 30 (12), pp. 1248-1255 (2011年12月号).
  Hiroshi Ito, Hiroshi Kori:
  "Birth Stroy of Biological rhythms: A Mathematical Point of View",
  Saibo-Kougaku 30 (12), pp. 1248-1255 (2011).
  

• 増田直紀、河村洋史、郡宏：
  「ネットワークの構造が生物リズムの精度に与える影響について」
  精密工学会誌 77, 145-148 (2011).

• H. KORI "Approach to dynamical systems: examples of oscillatory phenomena",
  in Japanese science magazine "Suri Kagaku" {\bf 572} (2011, in Japanese)
  

  郡宏
  「力学系によるアプローチ：振動現象を具体例として」
  サイエンス社「数理科学」, 44年(12), pp. 33-38, (2011) （最終稿）

• H. KORI and N. MASUDA, "Synchronization of Coupled Oscillators on Complex networks",
  Jounal of the Robot Society of Japan (Vol 26, No. 1, pp. 6-9, 2008, in Japanese)
  

  郡宏，増田直紀
  「結合振動子における集団引き込みと複雑ネットワーク」
  日本ロボット学会誌 Vol 26, No. 1, pp. 6-9, 2008年1月

• N. MASUDA and H. KORI, "Complex networks: introduction and relations to synaptic plasticity",
  Jounal of Japanese Neural Network Society (Vol 14, No. 3, pp. 173-185, 2007, in Japanese)
  

  増田直紀，郡宏
  「複雑ネットワーク:導入およびシナプス可塑性との関係」
  日本神経回路学会誌 Vol.14, No.3, pp. 173-185, 2007年9月

• H. KORI,
  "Series: Frontier of Network Science, the 3rd article, Entrainment of Oscillator Network and Biological Clocks",
  in Japanese science magazine "Suri Kagaku" (Dec 2006, in Japanese)
  

  郡宏
  サイエンス社「数理科学」、2006年12月号、
  連載「ネットワーク科学最前線」、第3回、「振動子ネットワークの引き込みと体内時計」
  

• H. KORI and Y. KURAMOTO,
  "Series: Frontier of Network Science, the 2rd article, Complex Networks and Nonlinear Science",
  in Japanese science magazine "Suri Kagaku" (Nov 2006, in Japanese),
  

  郡宏、蔵本由紀、
  サイエンス社「数理科学」、2006年11月号、
  「連載：ネットワーク科学最前線」、第2回、「複雑ネットワークと非線形科学」
  

• H. Kori and A. S. Mikhailov,
  "Entrainment of Complex Oscillator Networks",
  in Science of Complex Networks: From Biology to the Internet and WWW,
  editted by J. F. F. Mendes et.al., AIP Conference Proceedings,
  vol. 776, pp. 157-165 (Melville, New York, 2005).
  

Proceedings

• H. Kori and A. S. Mikhailov,
  "Entrainment of Complex Oscillator Networks",
  in Science of Complex Networks: From Biology to the Internet and WWW,
  editted by J. F. F. Mendes et.al., AIP Conference Proceedings,
  vol. 776, pp. 157-165 (Melville, New York, 2005).
  

Theses

• Doctor Thesis "Slow switching in globally coupled oscillators"
  thesis_kori.pdf (0.7Mb)
  (January 2003)
  
• Master Thesis "Structure of the slow switching phenomenon and examples in neural network models" (in Japanese)
  kori-master.ps.gz (0.3Mb)
  kori-master.pdf (3.8Mb)
  (February 2000)
  

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